BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018A03SP1|AL427236
(820 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig909 1249 0.0
>3x_Contig909
Length = 3333
Score = 1249 bits (624), Expect = 0.0
Identities = 641/652 (98%)
Strand = Plus / Plus
Query: 169 cttcatcaggataatggtgctagtttgaggaaccaagtcacaacaccatccataatgcag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cttcatcaggataatggtgctagtttgaggaaccaagtcacaacaccatccataatgcag 69
Query: 229 aacagaataccatctggtttccaaacaaatactcagcaacacatgacttcttctagtctg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aacagaataccatctggtttccaaacaaatactcagcaacacatgacttcttctagtctg 129
Query: 289 ttaaggaaccagggtatttctcccccgcmacaacagattggcataaatcaatctaacact 348
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 130 ttaaggaaccagggtatttctcccccgcaacaacagattggcataaatcaatctaacact 189
Query: 349 gtgcgggttccttctttataccagtcacaaccaggcacaccaggcatcaacgaaaacaga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gtgcgggttccttctttataccagtcacaaccaggcacaccaggcatcaacgaaaacaga 249
Query: 409 tttgcgcaattaacttctgctcaattgcmacagcaacaatctcaacaacaacaacaacct 468
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 250 tttgcgcaattaacttctgctcaattgcaacagcaacaatctcaacaacaacaacaacct 309
Query: 469 ctagcaccgcagcatacttcagagtccattcattccaactacagtgttcattctatccac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctagcaccgcagcatacttcagagtccattcattccaactacagtgttcattctatccac 369
Query: 529 gactatgttcctggttctaacaaccaaggttaccaatcgggctctatatcagctagtggt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gactatgttcctggttctaacaaccaaggttaccaatcgggctctatatcagctagtggt 429
Query: 589 gacatgctggatgatggtttgaccagaagtttaagtggattggstctaggaaagagacat 648
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 430 gacatgctggatgatggtttgaccagaagtttaagtggattggatctaggaaagagacat 489
Query: 649 ggaacttcggctactaacagtaataatctatggagctgagtttttctactgttttacctg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggaacttcggctactaacagtaataatctatggagctgagtttttctactgttttacctg 549
Query: 709 tctcgactttamttaatacactctcamaamttccgttaamhmccttaatgttaccaaagt 768
||||||||||| |||||||||||||| || |||||| || ||||||||||||||||||
Sbjct: 550 tctcgactttacttaatacactctcacaacttccgtaaacacccttaatgttaccaaagt 609
Query: 769 ttaaagcgatgacaatkatgattacgataattaatatgaagcctccccctct 820
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaaagcgatgacaataatgattacgataattaatatgaagcctccccctct 661
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5231
Number of Sequences: 1807
Number of extensions: 5231
Number of successful extensions: 446
Number of sequences better than 1.0e-20: 1
length of query: 820
length of database: 10,358,551
effective HSP length: 16
effective length of query: 804
effective length of database: 10,329,639
effective search space: 8305029756
effective search space used: 8305029756
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)